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ExomesGenomesTotal
Filters No dataPassNot in exomes
Allele Count-59885988
Allele Number-152148152148
Allele Frequency-0.039360.03936
Grpmax Filtering AF
(95% confidence)
-0.1193
East Asian
0.1193
East Asian
Number of homozygotes-281281

External Resources

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Genetic Ancestry Group Frequencies

Note Local ancestry data is available for this variant by selecting the tab below. See our blog post on local ancestry inference for Admixed American samples in gnomAD for more information.

6575160440.1273
4143414902130.09986
4774820150.09896
1429400.04762
67211230.03172
2281526050.01494
23346800.006632
691000.006593
3656801810.005366
81061600.0007536
XX3036777661470.03904
XY2952743821340.03969
Total59881521482810.03936
Include:

Related Variants

Liftover

The following GRCh37 variant lifts over to this variant:

Variant Effect Predictor

This variant falls on 1 transcript in 1 gene.

Note The gene symbols shown below are provided by VEP and may differ from the symbol shown on gene pages.

  1. intron

    1. LINC02356

      1. ENST00000552663.2
        Ensembl canonical transcript for LINC02356
        HGVSc
        n.162+4682A>T

In Silico Predictors

  • CADD: 2.60
  • Pangolin: 0.00
  • phyloP: 0.107
Note For more detailed and up to date SpliceAI and Pangolin predictions, please visit our SpliceAI Lookup browser

Genomic Constraint of Surrounding 1kb Region

This variant does not have non coding constraint data for the surrounding region.

Age Distribution

  • Exome
  • Genome
  • Variant carriers
  • All individuals
< 3030-3535-4040-4545-5050-5555-6060-6565-7070-7575-80> 80Age050100150200250300350400450Variant carriers05001.00K1.50K2.00K2.50K3.00K3.50K4.00KAll individuals

Genotype Quality Metrics

  • Exome
  • Genome
  • Variant carriers
  • All individuals
0-510-1520-2530-3540-4550-5560-6570-7580-8590-95> 100Genotype quality05001.00K1.50K2.00K2.50K3.00K3.50K4.00K4.50K5.00KVariant carriers02.00K4.00K6.00K8.00K10.0K12.0K14.0K16.0K18.0K20.0K22.0K24.0K26.0K28.0KAll individuals

Site Quality Metrics

  • Exome
  • Genome
1e11e1.51e21e2.51e31e3.51e41e4.51e51e5.51e61e6.51e71e7.51e81e8.51e91e9.51e10SiteQuality0200K400K600K800K1.00M1.20M1.40MGenome variants4.713e+6

Value: 4.713e+6 (genome samples)

Site quality approximation for all variants with 0.02 <= AF < 0.05.

Note: These are site-level quality metrics, they may be unpredictable for multi-allelic sites.

Read Data


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