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SNV:16-53811788-A-G (GRCh37)

Dataset
ExomesGenomesTotal
Filters No variantPass
Allele Count96729672
Allele Number3133431334
Allele Frequency0.30870.3087
Grpmax Filtering AF
(95% confidence)		0.4117
European (non-Finnish)
Number of homozygotes18401840
Mean depth of coverage–33.2

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Genetic Ancestry Group Frequencies

148290300.5103
64641538213730.4202
137634702690.3965
3901088750.3585
186844240.2204
2001558210.1284
9088702480.1043
000-
XX4382138928440.3154
XY5290174429960.3033
Total96723133418400.3087

* Allele frequencies for some sub-continental populations were not computed for genome samples.

Include:

Related Variants

Liftover

This variant lifts over to the following GRCh38 variant:

Nearby Variants

View variants located within 20 bases of this variant.

Ensembl Variant Effect Predictor

This variant falls on 4 transcripts in 1 gene.

Note The gene symbols shown below are provided by VEP and may differ from the symbol shown on gene pages.

  1. intron

    1. FTO

      1. ENST00000471389.1
        Ensembl canonical transcript for FTO
        HGVSc
        c.46-32264A>G
      2. ENST00000394647.3
        HGVSc
        c.-215-32264A>G
      3. ENST00000464071.1
        HGVSc
        c.46-32264A>G

Age Distribution

  • Exome
  • Genome
  • Variant carriers
  • All individuals

Genotype Quality Metrics

  • Exome
  • Genome
  • Variant carriers
  • All individuals

Note: This plot may include low-quality genotypes that were excluded from allele counts in the tables above.

Site Quality Metrics

  • Exome
  • Genome

Value: 6.120e+6 (genome samples)

This is the site quality distribution for all genome variants with 0.2 <= AF < 0.5.

Note: These are site-level quality metrics, they may be unpredictable for multi-allelic sites.

Read Data


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